PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21780_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 228aa    MW: 25879.4 Da    PI: 4.2475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21780_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.8e-051311503655
                  S-STCHHHHHHHHHHHHHHH CS
          HLH  36 kKlsKaeiLekAveYIksLq 55 
                  +K   a++L +AveYIk Lq
  RrC21780_p1 131 PKAHTASVLNEAVEYIKFLQ 150
                  68889**************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-5128160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-6129156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTGEFEMAGT WWSSPINTNT SIFSGYSLPR PTESSLDITD FEWQNFDNKT NDHNDDFMNT  60
HNSFFEGLFD PNEQLLSDSW PKTTISTAKS ELLESFPFLD NMFLINSEAH DHINDHKSKE  120
QITQDCMNLT PKAHTASVLN EAVEYIKFLQ EQVTVLVNPD HNTRESVQRQ QCSDKEEEEC  180
NSRRHVDLAS RGLCLMPISA SYPVAAAAAS AAEMNTYDFS NLTFPMNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0154467e-31BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610521.11e-102PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH114
SwissprotQ9M0X81e-82BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A078IAP91e-126A0A078IAP9_BRANA; BnaA09g19880D protein
STRINGBra029562.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-55bHLH family protein